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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7470241_7476369_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7470241 - 7476369
Intron Length:
6129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTCTGTGTT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AGTGCTTTAATT
Flanking Amino Acid:
MCQRMMKFAWDSYK
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.3
68.8
42.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
39.7
-1.2
3.2
49.8
46.4
Minor BPS
69.7
0.7
1.3
78.72
38

Associated Gene:

Gene:
MAN1C1
Ensembl Gene ID:
ENSAPLG00000016115
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038984
7469928 - 7511298
41371