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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7490601_7493053_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7490601 - 7493053
Intron Length:
2453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TTGCAGTCAATT
Flanking Amino Acid:
WVEKSFDLNVNGEASLFEVN
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
79.4
0.73
1
80.1
32
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
44.6
-0.3
2.3
66.7
44

Associated Gene:

Gene:
MAN1C1
Ensembl Gene ID:
ENSAPLG00000016115
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038984
7469928 - 7511298
41371
ENSAPLT00000035313
7476370 - 7518404
42035
ENSAPLT00000016824
7476370 - 7511985
35616