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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7502520_7506106_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7502520 - 7506106
Intron Length:
3587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAGGTATC
5'SS Class:
major
3'SS Sequence:
TTTCTCACTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GCTTTCTCACTA
Flanking Amino Acid:
LSPVTGNWVQHHVSIGGLGD
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.2
0.29
1.4
67.1
44.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
79.7
0.67
0.8
74.4
29.2
Minor 5ss
39.8
-1.1
3.1
49.3
40.4
Minor BPS
48.8
-0
1.8
59.42
41.1

Associated Gene:

Gene:
MAN1C1
Ensembl Gene ID:
ENSAPLG00000016115
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038984
7469928 - 7511298
41371
ENSAPLT00000035313
7476370 - 7518404
42035
ENSAPLT00000016824
7476370 - 7511985
35616