About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7510537_7518391_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7510537 - 7518391
Intron Length:
7855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCAAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TCTTCCCAAATT
Flanking Amino Acid:
QQSFFLAETLKSWH*
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
61.6
0.26
0.9
60.9
34
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
58.7
0.35
2
80.27
42.1

Associated Gene:

Gene:
MAN1C1
Ensembl Gene ID:
ENSAPLG00000016115
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035313
7476370 - 7518404
42035