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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7535438_7536102_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7535438 - 7536102
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
CTTACTGTAATT
Flanking Amino Acid:
LKPCPRATFEVLPNVSELYL
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
89
0.88
0.6
88.7
20.7
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
55.1
0.24
2.1
75.87
41.7

Associated Gene:

Gene:
MTFR1L
Ensembl Gene ID:
ENSAPLG00000016018
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016718
7534792 - 7542679
7888