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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7536213_7537311_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7536213 - 7537311
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTGGTTTC
5'SS Class:
major
3'SS Sequence:
TTTTGTCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAG
U12 Branch Point Sequence:
TTGTCAGTGACC
Flanking Amino Acid:
ADDEETYARVRSDTRPLKHK
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
74.3
37.2
Major BPS
60.9
0.27
1.7
71.4
45.1
Major PPT
82.8
0.74
0.7
78.3
30.6
Minor 5ss
39.7
-1.2
3
52.8
44.4
Minor BPS
50
-0
2.3
70.83
40.9

Associated Gene:

Gene:
MTFR1L
Ensembl Gene ID:
ENSAPLG00000016018
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016718
7534792 - 7542679
7888