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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7537524_7539357_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7537524 - 7539357
Intron Length:
1834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
GTTTGTTTATCT
Flanking Amino Acid:
QIAKIVAAESASPSFTPDVL
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
58.6
0.35
2
80.3
41.9

Associated Gene:

Gene:
MTFR1L
Ensembl Gene ID:
ENSAPLG00000016018
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016718
7534792 - 7542679
7888