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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_823243_824006_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
823243 - 824006
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGTGA
5'SS Class:
major
3'SS Sequence:
GTTTCTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTGATTTTAACC
Flanking Amino Acid:
KGDYLGKTVQVVPHITDAIQ
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
64.6
37.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
87.3
0.84
0.7
85.2
29.6
Minor 5ss
30.7
-2.2
3.2
38.6
46.4
Minor BPS
64.4
0.43
1.3
67.16
38.5

Associated Gene:

Gene:
CTPS1
Ensembl Gene ID:
ENSAPLG00000016028
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016759
822560 - 839093
16534