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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_824108_825326_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
824108 - 825326
Intron Length:
1219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTAGC
5'SS Class:
major
3'SS Sequence:
TGTCTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTAACTTTAATT
Flanking Amino Acid:
GIEPQVCVIELGGTVGDIES
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
70
40.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85.7
0.8
0.7
84.8
30
Minor 5ss
38.5
-1.3
2.4
46.6
41.7
Minor BPS
76.1
0.9
1.1
85.55
34.5

Associated Gene:

Gene:
CTPS1
Ensembl Gene ID:
ENSAPLG00000016028
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016759
822560 - 839093
16534