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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_82888_84554_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82888 - 84554
Intron Length:
1667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGCGGG
5'SS Class:
major
3'SS Sequence:
TTCAATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTTCAATT
Flanking Amino Acid:
LWEAFLAHRQRRVYRTTTHV
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.4
49.7
43.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.3
0.75
0.8
80.6
36.5
Minor 5ss
29.8
-2.3
3.4
38.2
46.8
Minor BPS
65.2
0.55
1.5
79.05
38

Associated Gene:

Gene:
ZMPSTE24
Ensembl Gene ID:
ENSAPLG00000011563
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012061
82771 - 103071
20301