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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_829028_830291_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
829028 - 830291
Intron Length:
1264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATTGGTGAAAT
Flanking Amino Acid:
MLMKWKEMADRYDRLLETCS
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80
0.68
0.8
78.2
36
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
45.3
-0.2
2.5
71.51
44.7

Associated Gene:

Gene:
CTPS1
Ensembl Gene ID:
ENSAPLG00000016028
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016759
822560 - 839093
16534