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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_831331_832724_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
831331 - 832724
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGATTC
5'SS Class:
major
3'SS Sequence:
CACTCTCGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ATCTTCTCACTC
Flanking Amino Acid:
HEAWQKLCGAHGVLVPGGFG
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70
35.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
70.9
0.47
0.9
65
35.9
Minor 5ss
44.7
-0.6
3.1
65.4
39.7
Minor BPS
48.9
-0.1
1.8
60.02
39.9

Associated Gene:

Gene:
CTPS1
Ensembl Gene ID:
ENSAPLG00000016028
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016759
822560 - 839093
16534