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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_832820_833408_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
832820 - 833408
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTGTCCTGACTT
Flanking Amino Acid:
WARKQKKPFLGVCLGMQLAV
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
75
0.62
1
65.3
41.5
Major PPT
89.3
0.88
0.6
84.8
22.8
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
62.6
0.47
1.8
80.61
41.6

Associated Gene:

Gene:
CTPS1
Ensembl Gene ID:
ENSAPLG00000016028
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016759
822560 - 839093
16534