About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_833472_834317_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
833472 - 834317
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTAACGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTAATCAATT
Flanking Amino Acid:
EFARSVLGWQDANSTEFDPK
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77
31.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
70.2
0.45
1
62
43.9
Minor 5ss
33
-1.9
3.1
42.1
44.5
Minor BPS
50.4
0.09
2
74.58
42.1

Associated Gene:

Gene:
CTPS1
Ensembl Gene ID:
ENSAPLG00000016028
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016759
822560 - 839093
16534