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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_835891_836247_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
835891 - 836247
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTAATG
Flanking Amino Acid:
GERMEVVELEEHPFFVGVQY
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
88.1
0.86
0.6
84.9
22.8
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
68.9
0.45
1.7
72.41
40.7

Associated Gene:

Gene:
CTPS1
Ensembl Gene ID:
ENSAPLG00000016028
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016759
822560 - 839093
16534