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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_836393_839002_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
836393 - 839002
Intron Length:
2610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTGAATTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TCTTCCTGAATT
Flanking Amino Acid:
YLQKGCRLSPRDTYSDRSGS
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.2
30.6
Major BPS
62
0.3
1
62.3
30.4
Major PPT
68.4
0.41
0.9
61.6
39.7
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
77.9
0.95
1.3
88.83
36.2

Associated Gene:

Gene:
CTPS1
Ensembl Gene ID:
ENSAPLG00000016028
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016759
822560 - 839093
16534