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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_846948_849222_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
846948 - 849222
Intron Length:
2275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
AGGGCTCTGACA
Flanking Amino Acid:
GPHADLFRKHEIDGKALLLL
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
82.2
0.72
0.7
76.4
25.7
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
46.6
-0.2
1.7
53.64
38.8

Associated Gene:

Gene:
SCMH1
Ensembl Gene ID:
ENSAPLG00000015777
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016462
846822 - 896889
50068