About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_84702_87316_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
84702 - 87316
Intron Length:
2615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTCCCCCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTCCCCCAAAG
Flanking Amino Acid:
SGLYSEVEGTMILICGGIPF
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.8
36.6
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
71.2
0.48
1
71.9
26.8
Minor 5ss
41.3
-1
2.8
62.9
41
Minor BPS
48.7
-0.2
2
64
42.9

Associated Gene:

Gene:
ZMPSTE24
Ensembl Gene ID:
ENSAPLG00000011563
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012061
82771 - 103071
20301