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Intron Name: Anas_platyrhynchos_platyrhynchos_24_850738_856084_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

850738 - 856084

Intron Length:

5347

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCACA

5'SS Class:

strong_major

3'SS Sequence:

TGGTGCGTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTCAT

U12 Branch Point Sequence:

TGTGCACTGATT

Flanking Amino Acid:

LPKNDRHPLEGETFVLGDGL

Intron Amino Acid Position:

538

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.9

76.7

33.9

Major BPS

79.8

0.74

0.9

81.3

29.9

Major PPT

68.6

0.42

1.1

47.3

Minor 5ss

34.2

-1.8

2.8

40.7

45.3

Minor BPS

47.2

-0.1

69.89

Associated Gene:

Gene:

SCMH1

Ensembl Gene ID:

ENSAPLG00000015777

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016462

846822 - 896889

50068