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Intron Name: Anas_platyrhynchos_platyrhynchos_24_863005_864053_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

863005 - 864053

Intron Length:

1049

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGTC

5'SS Class:

strong_major

3'SS Sequence:

CTCATCTTGGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

CGTTTCTCATCT

Flanking Amino Acid:

IPSSAMQAPTVCIYLNKNGS

Intron Amino Acid Position:

365

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.7

0.96

0.8

81.9

31.6

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

72.2

0.5

68.5

37.2

Minor 5ss

33.8

-1.8

3.7

49.2

47.3

Minor BPS

53.5

0.19

1.9

72.47

44.4

Associated Gene:

Gene:

SCMH1

Ensembl Gene ID:

ENSAPLG00000015777

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016462

846822 - 896889

50068