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Intron Name: Anas_platyrhynchos_platyrhynchos_24_864181_864750_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

864181 - 864750

Intron Length:

570

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAGCT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTCAT

U12 Branch Point Sequence:

ATATCCTCATCT

Flanking Amino Acid:

RKRGPKPGSKRKPRTLLNPA

Intron Amino Acid Position:

323

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

74.9

33.2

Major BPS

82.3

0.8

0.9

81.8

30.8

Major PPT

92.2

0.95

0.6

88.3

21.3

Minor 5ss

32.4

-2

3.5

48.3

47.4

Minor BPS

61.8

0.45

1.8

80.08

41.3

Associated Gene:

Gene:

SCMH1

Ensembl Gene ID:

ENSAPLG00000015777

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016462

846822 - 896889

50068