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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_883269_884237_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
883269 - 884237
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTAC
5'SS Class:
weak_major
3'SS Sequence:
CTTCTCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATATTTTCAACT
Flanking Amino Acid:
EMAPVRIFHKEPPSPSQNFF
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
71
35.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.1
0.72
0.7
77.3
24.6
Minor 5ss
57.5
0.25
2
69.7
41.2
Minor BPS
65.2
0.55
1.5
79.15
36.8

Associated Gene:

Gene:
SCMH1
Ensembl Gene ID:
ENSAPLG00000015777
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016462
846822 - 896889
50068