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Intron Name: Anas_platyrhynchos_platyrhynchos_24_884327_887588_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

884327 - 887588

Intron Length:

3262

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGCTGA

5'SS Class:

major

3'SS Sequence:

CCCTTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCCTTAC

U12 Branch Point Sequence:

CCAGCCTTACGT

Flanking Amino Acid:

KNGGMLQPPLGFRLNASSWP

Intron Amino Acid Position:

134

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.59

41.3

Major BPS

51.2

0.03

1.2

45.3

39.5

Major PPT

81.6

0.71

0.7

76.1

25.9

Minor 5ss

37.3

-1.4

38.1

46.8

Minor BPS

46.8

-0.1

59.67

49.5

Associated Gene:

Gene:

SCMH1

Ensembl Gene ID:

ENSAPLG00000015777

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016462

846822 - 896889

50068