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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_887824_888426_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
887824 - 888426
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTGGCTCTAACT
Flanking Amino Acid:
IPAPAHCFKQSYTPPANEFK
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
54.7
0.23
1.8
71.87
45.4

Associated Gene:

Gene:
SCMH1
Ensembl Gene ID:
ENSAPLG00000015777
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016462
846822 - 896889
50068