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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_95218_97140_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
95218 - 97140
Intron Length:
1923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTACCA
Flanking Amino Acid:
FPLTKVYVVEGSKRSSHSNA
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.1
0.7
0.9
74.8
39.6
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
70.7
0.65
1.8
84.46
35.5

Associated Gene:

Gene:
ZMPSTE24
Ensembl Gene ID:
ENSAPLG00000011563
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012061
82771 - 103071
20301