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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_103486_103823_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
103486 - 103823
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGGGCA
5'SS Class:
major
3'SS Sequence:
CCTCTGTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCCAT
U12 Branch Point Sequence:
ATTTCCAGCAGG
Flanking Amino Acid:
DGQEEAANEIKEDAVAPKTP
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
65.6
33.8
Major BPS
62.2
0.3
1.4
72.5
43.5
Major PPT
73.9
0.54
0.8
67.5
32.5
Minor 5ss
25.8
-2.8
3.3
29.9
37
Minor BPS
42.3
-0.7
2.4
55.69
45.2

Associated Gene:

Gene:
ESAM
Ensembl Gene ID:
ENSAPLG00000018034
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024899
102152 - 107811
5660