Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_103963_104057_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

103963 - 104057

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTACG

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCAAAA

U12 Branch Point Sequence:

AGAGGCAAAACT

Flanking Amino Acid:

ECRIILEVHSTREGAIIAGA

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

0.9

74.2

36.1

Major BPS

44.1

-0.3

1.2

36.7

Major PPT

78.7

0.65

0.7

73.3

24.9

Minor 5ss

32.3

-2

2.6

35.2

34.2

Minor BPS

40.6

-0.6

2.2

56.85

45.2

Associated Gene:

Gene:

ESAM

Ensembl Gene ID:

ENSAPLG00000018034

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024899

102152 - 107811

5660