Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_104849_105331_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

104849 - 105331

Intron Length:

483

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGACTGGG

5'SS Class:

major

3'SS Sequence:

TTTCTCTGCGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGCCAT

U12 Branch Point Sequence:

CCATCCGGACAT

Flanking Amino Acid:

LDKADADPFQILTYLDGVVK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

1.1

63.1

43.4

Major BPS

47.8

-0.1

1.6

58.2

48.3

Major PPT

80.1

0.68

0.9

76.6

Minor 5ss

32.2

-2

3.1

40.6

45.6

Minor BPS

39.7

-0.7

2.3

54.49

46.7

Associated Gene:

Gene:

ESAM

Ensembl Gene ID:

ENSAPLG00000018034

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047640

101937 - 107811

5875

ENSAPLT00000024899

102152 - 107811

5660