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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1073587_1073924_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1073587 - 1073924
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TCCTTATGAACG
Flanking Amino Acid:
ASEATWVMMLDMECADVPLL
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.7
43.7
Major BPS
75.5
0.63
1
66
40.9
Major PPT
85.7
0.8
0.8
83.9
31.1
Minor 5ss
45.1
-0.5
2.9
56.3
47.9
Minor BPS
49.6
-0.1
1.8
56.73
44.7

Associated Gene:

Gene:
ETS1
Ensembl Gene ID:
ENSAPLG00000003526
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026566
1051157 - 1074159
23003