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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1073587_1101038_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1073587 - 1101038
Intron Length:
27452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCGCC
5'SS Class:
major
3'SS Sequence:
CTGCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TCCTTATGAACG
Flanking Amino Acid:
KVDIDLFPSADMECADVPLL
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65.5
42
Major BPS
75.5
0.63
1
66
40.9
Major PPT
85.7
0.8
0.8
83.9
31.1
Minor 5ss
38.1
-1.3
3.3
52.1
44.7
Minor BPS
49.6
-0.1
1.8
56.73
44.7

Associated Gene:

Gene:
ETS1
Ensembl Gene ID:
ENSAPLG00000003526
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003631
1051157 - 1101120
49964