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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1169078_1170927_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1169078 - 1170927
Intron Length:
1850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTAATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.9
0.79
0.8
82.3
32.9
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
77.3
0.94
1
88.63
29.6

Associated Gene:

Gene:
FLI1
Ensembl Gene ID:
ENSAPLG00000003677
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003792
1168695 - 1260399
91705