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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1171010_1223608_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1171010 - 1223608
Intron Length:
52599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
TTAGTCATGACT
Flanking Amino Acid:
TVPDTSSYVKEALSVVSDDQ
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
55.9
0.27
1.7
76.38
40.2

Associated Gene:

Gene:
FLI1
Ensembl Gene ID:
ENSAPLG00000003677
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042345
1170928 - 1261147
90220
ENSAPLT00000032155
1170928 - 1261147
90220
ENSAPLT00000003792
1168695 - 1260399
91705