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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1223821_1232189_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1223821 - 1232189
Intron Length:
8369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCACATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTCCTTTCACA
Flanking Amino Acid:
KREYDHMNGSRESPVDCSVN
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
80
0.75
1
78.6
31
Major PPT
81.8
0.71
0.8
78.4
34.4
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
68.2
0.57
1.7
80.59
35.2

Associated Gene:

Gene:
FLI1
Ensembl Gene ID:
ENSAPLG00000003677
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024448
1181596 - 1260399
78804
ENSAPLT00000003792
1168695 - 1260399
91705
ENSAPLT00000042345
1170928 - 1261147
90220
ENSAPLT00000042186
1181596 - 1261147
79552
ENSAPLT00000032155
1170928 - 1261147
90220