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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_122750_127773_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
122750 - 127773
Intron Length:
5024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTACCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TAAAACATAACT
Flanking Amino Acid:
HCYQTGEQELDEMPTTKRTL
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
84.3
0.77
0.8
81.3
30.4
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
53.7
0.19
1.9
73.79
41.7

Associated Gene:

Gene:
MSANTD2
Ensembl Gene ID:
ENSAPLG00000012824
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013345
113097 - 135499
22403