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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1232345_1235635_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1232345 - 1235635
Intron Length:
3291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCATGA
5'SS Class:
major
3'SS Sequence:
GCTTTTCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TCATATATAATG
Flanking Amino Acid:
TNERRVIVPADPTLWTQEHV
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
59.8
42
Major BPS
79
0.72
1
78.4
31.2
Major PPT
75.4
0.57
1
69.2
41.8
Minor 5ss
41.8
-0.9
3.2
57
47.1
Minor BPS
47.9
-0.3
1.8
53.85
41.4

Associated Gene:

Gene:
FLI1
Ensembl Gene ID:
ENSAPLG00000003677
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032155
1170928 - 1261147
90220
ENSAPLT00000024448
1181596 - 1260399
78804
ENSAPLT00000003792
1168695 - 1260399
91705
ENSAPLT00000042345
1170928 - 1261147
90220
ENSAPLT00000042186
1181596 - 1261147
79552