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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1235840_1242371_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1235840 - 1242371
Intron Length:
6532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATT
Flanking Amino Acid:
LLSHLSYLRESSSLLVYNTP
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
100
1.24
0.5
100
0
Major PPT
86.7
0.82
0.7
80.9
29.6
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
59.7
0.39
1.7
80.3
36.2

Associated Gene:

Gene:
FLI1
Ensembl Gene ID:
ENSAPLG00000003677
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032155
1170928 - 1261147
90220
ENSAPLT00000024448
1181596 - 1260399
78804
ENSAPLT00000003792
1168695 - 1260399
91705
ENSAPLT00000042345
1170928 - 1261147
90220
ENSAPLT00000042186
1181596 - 1261147
79552