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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1242441_1256038_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1242441 - 1256038
Intron Length:
13598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTTTTGTCATT
Flanking Amino Acid:
EASSRLATKEDPSYDAVRRT
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.2
81.8
38.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
74.6
0.55
0.9
74.7
34.9
Minor 5ss
35.6
-1.6
3
50.5
45.8
Minor BPS
46.4
-0.2
2.3
69.97
42.5

Associated Gene:

Gene:
FLI1
Ensembl Gene ID:
ENSAPLG00000003677
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042186
1181596 - 1261147
79552
ENSAPLT00000032155
1170928 - 1261147
90220
ENSAPLT00000003792
1168695 - 1260399
91705