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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1256105_1257402_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1256105 - 1257402
Intron Length:
1298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
CCTATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
TCTTTCCTATTT
Flanking Amino Acid:
GSNMNSGLTKSPPVAGTQNV
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.5
40.6
Major BPS
66.4
0.41
1
61.3
37
Major PPT
84.9
0.78
0.8
79
32.9
Minor 5ss
37.7
-1.4
3
50.6
39.9
Minor BPS
53.9
0.2
1.9
75.75
41.6

Associated Gene:

Gene:
FLI1
Ensembl Gene ID:
ENSAPLG00000003677
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042186
1181596 - 1261147
79552
ENSAPLT00000032155
1170928 - 1261147
90220
ENSAPLT00000003792
1168695 - 1260399
91705