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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1257466_1258744_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1257466 - 1258744
Intron Length:
1279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTTAAAT
Flanking Amino Acid:
KTTEQQRPQPDPYQILGPTS
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
85.2
32.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.4
0.71
1
86.9
31.1
Minor 5ss
44.2
-0.6
3.3
66.9
44.4
Minor BPS
68.3
0.65
1.3
78.91
37.3

Associated Gene:

Gene:
FLI1
Ensembl Gene ID:
ENSAPLG00000003677
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024448
1181596 - 1260399
78804
ENSAPLT00000003792
1168695 - 1260399
91705
ENSAPLT00000042345
1170928 - 1261147
90220
ENSAPLT00000042186
1181596 - 1261147
79552
ENSAPLT00000032155
1170928 - 1261147
90220