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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1258793_1259869_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1258793 - 1259869
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTCC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTCCTTTCATT
Flanking Amino Acid:
GPTSSRLANPGSGQIQLWQF
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
30.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
88.4
0.86
0.7
84.2
30.7
Minor 5ss
40.8
-1
2.8
53.7
43.5
Minor BPS
66.2
0.59
1.7
84.98
35.9

Associated Gene:

Gene:
FLI1
Ensembl Gene ID:
ENSAPLG00000003677
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024448
1181596 - 1260399
78804
ENSAPLT00000003792
1168695 - 1260399
91705
ENSAPLT00000042345
1170928 - 1261147
90220
ENSAPLT00000042186
1181596 - 1261147
79552
ENSAPLT00000032155
1170928 - 1261147
90220