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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_128033_128624_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128033 - 128624
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
GGGTGATTAACA
Flanking Amino Acid:
QSELVRNAKYTLRRCYSRVK
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
89.1
24.2
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
81.3
0.7
0.8
81
31
Minor 5ss
39.8
-1.1
2.9
56
41.5
Minor BPS
49.9
-0
2.1
62.27
43.4

Associated Gene:

Gene:
MSANTD2
Ensembl Gene ID:
ENSAPLG00000012824
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013345
113097 - 135499
22403