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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1281434_1307978_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1281434 - 1307978
Intron Length:
26545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTCTCAG
5'SS Class:
major
3'SS Sequence:
TTTGTAATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTTTTGTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
57.5
43
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
72.9
0.51
1
67.7
41.6
Minor 5ss
39.8
-1.1
2.8
49
47.2
Minor BPS
56.5
0.2
2
70.9
36

Associated Gene:

Gene:
KCNJ5
Ensembl Gene ID:
ENSAPLG00000003864
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032304
1281022 - 1329501
48480