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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_128670_135352_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128670 - 135352
Intron Length:
6683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTCTTTTAAAT
Flanking Amino Acid:
PECCLKPFREQLHKRQSELV
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
74.9
38.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.9
79.2
38
Minor 5ss
38.1
-1.3
3.1
48.2
47.9
Minor BPS
58.7
0.35
1.4
69.62
41.7

Associated Gene:

Gene:
MSANTD2
Ensembl Gene ID:
ENSAPLG00000012824
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013345
113097 - 135499
22403