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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1352737_1361034_F

Intron Information:

Intron Rank:
141950
Intron Class:
major
Intron Phase:
Intron Coordinates:
1352737 - 1361034
Intron Length:
8298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TCTTTACCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.6
0.64
0.8
70.4
35.3
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
76.8
0.82
1.5
85.93
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026420
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042646
1352664 - 1361106
8443