Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1388985_1389770_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1388985 - 1389770

Intron Length:

786

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAGAGG

5'SS Class:

major

3'SS Sequence:

GTTCTCACTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAC

U12 Branch Point Sequence:

CTGTTCTCACTT

Flanking Amino Acid:

FHTVIDFPSERKRPPNKMKK

Intron Amino Acid Position:

224

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.2

0.45

1.1

57.6

46.8

Major BPS

0.87

0.8

85.6

Major PPT

78.5

0.64

0.9

74.8

34.7

Minor 5ss

29.6

-2.3

3.4

39.2

46.3

Minor BPS

49.2

0.02

1.8

66.93

44.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003865

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036896

1376904 - 1397145

20242

ENSAPLT00000003966

1376904 - 1397145

20242