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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1392322_1393590_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1392322 - 1393590
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATC
Flanking Amino Acid:
LAIVWAPNLLRSKQIESACF
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.1
0.88
0.6
88
22.1
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
75.6
0.78
1.3
83.1
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003865
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036896
1376904 - 1397145
20242
ENSAPLT00000003966
1376904 - 1397145
20242