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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1512941_1513469_F

Intron Information:

Intron Rank:
136316
Intron Class:
major
Intron Phase:
Intron Coordinates:
1512941 - 1513469
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTATTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.8
0.4
1
63.6
40.6
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
61.3
0.44
1.9
84.41
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023449
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029676
1512448 - 1513629
1182