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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1523361_1523511_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1523361 - 1523511
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
GTTAAAGCAATA
Flanking Amino Acid:
YENVDFGNIQLLLCSGPEAV
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
37.7
-0.9
2.3
51.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024943
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038485
1523244 - 1544948
21705