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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1523597_1523966_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1523597 - 1523966
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTTC
5'SS Class:
strong_major
3'SS Sequence:
TGATATGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTGCTTTTGATA
Flanking Amino Acid:
PGLMGCDAFHRLSFTKGHFP
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
76.3
33.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
70.5
0.46
1
66.3
44.7
Minor 5ss
40.6
-1
3.4
58.3
46.6
Minor BPS
53.9
0.12
1.2
59.2
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024943
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038485
1523244 - 1544948
21705