Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_1524009_1525044_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1524009 - 1525044

Intron Length:

1036

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

TCTGCACCCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

TTGTTCTGCACC

Flanking Amino Acid:

TASMKVKNVKKYINPGLMGC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

71.6

31.9

Major BPS

73.1

0.58

79.6

29.1

Major PPT

70.7

0.47

0.9

66.6

34.5

Minor 5ss

32.4

-2

3.3

39.8

Minor BPS

55.1

0.14

1.9

70.55

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024943

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038485

1523244 - 1544948

21705